PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0122s0023.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 301aa    MW: 33752.1 Da    PI: 9.0319
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0122s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-163411910100
                          HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           ++ + +++p  f++++ g     + ++tl +  gr+W++ +  ++ +++  ++ GWkeF++an L+  D++ F+++g s+f   v+vf+
  Kalax.0122s0023.1.p  34 DFS-DKMRVPPAFVRRFpG-G--FPEKITLDSCAGREWRIDVAKSRDDNSLCFRCGWKEFAEANSLQFADVLFFSYVGGSTF--DVRVFD 117
                          444.4599*********54.4..4457***************99999999***************************98888..999999 PP

                          SS CS
                   B3  99 ks 100
                          ks
  Kalax.0122s0023.1.p 118 KS 119
                          85 PP

2B343.17.8e-14202299797
                          .-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE........EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   7 psdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliy......rkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                          ++++ ++g l +p +f++++   g    +s+ ++l   +sgr+W  +++        +++ r  +l++G k Fv +n+L+eg ++ F+l+
  Kalax.0122s0023.1.p 202 SKSSCQRGYLNVPMSFVQRCpelG---SGSRRVKLSVpSSGRTWLTNYTTrlekcrGRRQ-RrNLLSGGFKAFVVDNNLREGNVCAFELV 287
                          4555667789**********7532...46678888886789*******878877743333.36*************************** PP

                          SSSEE..EEEEE CS
                   B3  86 grsefelvvkvf 97 
                          +++++ ++v++f
  Kalax.0122s0023.1.p 288 DEQDAVFNVHIF 299
                          999998999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-2222121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-2123121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.71924119IPR003340B3 DNA binding domain
CDDcd100174.01E-2026117No hitNo description
SMARTSM010191.7E-1127119IPR003340B3 DNA binding domain
PfamPF023621.4E-1429118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-17193300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-15193300IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-14195300No hitNo description
PROSITE profilePS5086312.139196300IPR003340B3 DNA binding domain
SMARTSM010196.5E-5197300IPR003340B3 DNA binding domain
PfamPF023622.2E-11201299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTFLRADSED NGHHHQPGLK TPELTSFYKI MISDFSDKMR VPPAFVRRFP GGFPEKITLD  60
SCAGREWRID VAKSRDDNSL CFRCGWKEFA EANSLQFADV LFFSYVGGST FDVRVFDKSG  120
CQKRINPALQ NPSDPPPVKL EPDSGCSSHQ PDFSCAPSRA CDTDVKELRA SAPGPKPTPS  180
KAFEQATDYS NTYTKSFRVR LSKSSCQRGY LNVPMSFVQR CPELGSGSRR VKLSVPSSGR  240
TWLTNYTTRL EKCRGRRQRR NLLSGGFKAF VVDNNLREGN VCAFELVDEQ DAVFNVHIFK  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-16B3 family protein